Chuangfu Chen, Wolong Ma, Fei Guo, Antao Wang, Zhanhui Song,
Complete Genome Sequence of B. abortus RB51 and Genomic Comparison with B. abortus 2308,
Journal of Animal and Veterinary Advances,
Volume 13,Issue 9,
2014,
Pages 582-588,
ISSN 1680-5593,
javaa.2014.582.588,
(https://makhillpublications.co/view-article.php?doi=javaa.2014.582.588)
Abstract: A rifampin-resistant mutant of Brucella abortus, designated as RB51
was derived by repeated passage of strain 2308 on Trypticase soy supplemented
with 1.5% agar and varying concentrations rifampin or penicillin. In this study,
325 Mb data was produced for RB51 using Illumina HiSeq 2000 sequencing platform.
Based on the assemble result of RB51, researchers obtained that 36 scaffolds
with GC content of 57.25% which contains 150 contigs and has genome size was
about 3.26 Mb. Detail bioinformatics annotation of RB51 revealed that the genome
contained 3,283 genes, the total length of genes was 2,797,347 bp which makes
up 85.91% of genome. Comparative genomics analysis found that there was a tandem
repeat sequence of 339 nucleotide in YP_413569.1 protein. In addition, RB51
encoded a glycosyltransferase wboA in scaffold12, an enzyme essential in the
biosynthesis of O antigen which has been disrupted by IS711. In comparison with
the reference genome B. abortus 2308, researchers found that RB51 contained
135 SNPs and 5 InDels among which 1 SNP and 2 InDels may be associated with
virulent related to lipopolysaccharide.
Keywords: B. abortus RB51;genome sequence;functional annotation;wboA gene;scaffold